Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
A
all_cids() (in module pyrfume.odorants)
all_odorants() (in module pyrfume.odorants)
all_smiles() (in module pyrfume.odorants)
all_sources() (in module pyrfume.odorants)
attribute_type (pyrfume.dbtables.QuantityAdapter attribute)
B
bernoulli() (in module pyrfume.physics)
BetterFitness (class in pyrfume.optimization)
Block (class in pyrfume.dbtables)
Block.Trials (class in pyrfume.dbtables)
C
cactus() (in module pyrfume.odorants)
cactus_image() (in module pyrfume.odorants)
canonical_smiles() (in module pyrfume.odorants)
cas (pyrfume.odorants.Molecule attribute)
cas_from_synonyms() (in module pyrfume.odorants)
chemical_order (pyrfume.odorants.Compound attribute)
ChemicalOrder (class in pyrfume.odorants)
cid (pyrfume.odorants.Molecule attribute)
cids_to_cas() (in module pyrfume.odorants)
cids_to_smiles() (in module pyrfume.odorants)
components (pyrfume.odorants.Solution attribute)
Compound (class in pyrfume.dbtables)
(class in pyrfume.odorants)
compounds (pyrfume.odorants.Solution attribute)
compute_weight_stats() (pyrfume.optimization.OdorantSetOptimizer method)
create_quantity_adapter() (in module pyrfume.datajoint_tools)
crop_image() (in module pyrfume.odorants)
crossover() (pyrfume.optimization.OdorantSetOptimizer method)
D
dask_map() (pyrfume.optimization.OdorantSetOptimizer method)
date_arrived (pyrfume.odorants.Compound attribute)
date_created (pyrfume.odorants.Solution attribute)
date_opened (pyrfume.odorants.Compound attribute)
definition (pyrfume.dbtables.Block attribute)
(pyrfume.dbtables.Block.Trials attribute)
(pyrfume.dbtables.Compound attribute)
(pyrfume.dbtables.Design attribute)
(pyrfume.dbtables.Experiment attribute)
(pyrfume.dbtables.Experiment.Blocks attribute)
(pyrfume.dbtables.Investigator attribute)
(pyrfume.dbtables.Molecule attribute)
(pyrfume.dbtables.Odorant attribute)
(pyrfume.dbtables.Odorant.Solutions attribute)
(pyrfume.dbtables.Product attribute)
(pyrfume.dbtables.Publication attribute)
(pyrfume.dbtables.Report attribute)
(pyrfume.dbtables.Route attribute)
(pyrfume.dbtables.Site attribute)
(pyrfume.dbtables.Solution attribute)
(pyrfume.dbtables.Solution.Compounds attribute)
(pyrfume.dbtables.Stimulus attribute)
(pyrfume.dbtables.Stimulus.Odorants attribute)
(pyrfume.dbtables.Subject attribute)
(pyrfume.dbtables.Summary attribute)
(pyrfume.dbtables.Summary.Odorants attribute)
(pyrfume.dbtables.Technician attribute)
(pyrfume.dbtables.Trial attribute)
(pyrfume.dbtables.Vendor attribute)
(pyrfume.dbtables.Vessel attribute)
deisomerize_smiles() (in module pyrfume.odorants)
density (pyrfume.odorants.Molecule attribute)
Design (class in pyrfume.dbtables)
dilution_to_magnitude() (in module pyrfume.dream)
dilutions (pyrfume.odorants.Solution attribute)
display_molecules() (in module pyrfume.odorants)
drop_schema() (in module pyrfume.dbtables)
E
embed_molecules() (in module pyrfume.odorants)
embedding_distance_correlation() (in module pyrfume.embedding)
eval_individual() (pyrfume.optimization.OdorantSetOptimizer method)
eval_mean() (pyrfume.optimization.OdorantSetOptimizer method)
eval_sum() (pyrfume.optimization.OdorantSetOptimizer method)
Experiment (class in pyrfume.dbtables)
Experiment.Blocks (class in pyrfume.dbtables)
F
fill_details() (pyrfume.odorants.Molecule method)
force_keep() (pyrfume.optimization.OdorantSetOptimizer method)
format_bmc_data() (in module pyrfume.keller)
from_cids() (in module pyrfume.odorants)
G
get() (pyrfume.dbtables.QuantityAdapter method)
get_cid() (in module pyrfume.odorants)
get_cid_from_api() (pyrfume.odorants.Molecule method)
get_cids() (in module pyrfume.dream)
(in module pyrfume.odorants)
get_compound_odor() (in module pyrfume.odorants)
get_compound_summary() (in module pyrfume.odorants)
get_coverage() (in module pyrfume.optimization)
get_data() (in module pyrfume.sigma_ff)
get_data_path() (in module pyrfume.base)
get_descriptors() (in module pyrfume.dream)
get_entropy() (in module pyrfume.optimization)
get_ghs_classification() (in module pyrfume.pubchem)
get_kind() (in module pyrfume.odorants)
get_mainland() (in module pyrfume.cabinets)
get_name_from_api() (pyrfume.odorants.Molecule method)
get_physical_description() (in module pyrfume.pubchem)
get_raw() (in module pyrfume.loaders.manoel_2016)
get_remote_archives_info() (in module pyrfume.base)
get_remote_data_path() (in module pyrfume.base)
get_spacing() (in module pyrfume.optimization)
get_summary() (in module pyrfume.pubchem)
get_table() (in module pyrfume.dbtables)
get_tables() (in module pyrfume.dbtables)
get_translater() (in module pyrfume.loaders.manoel_2016)
get_x_distances() (in module pyrfume.westeros)
get_x_embeddings() (in module pyrfume.westeros)
H
handle_dict() (in module pyrfume.datajoint_tools)
I
import_classes() (in module pyrfume.datajoint_tools)
init_config() (in module pyrfume.base)
init_schema() (in module pyrfume.dbtables)
Investigator (class in pyrfume.dbtables)
is_kind() (in module pyrfume.odorants)
is_solvent (pyrfume.odorants.Compound attribute)
iupac (pyrfume.odorants.Molecule attribute)
K
known_impurities (pyrfume.odorants.ChemicalOrder attribute)
L
list_archives() (in module pyrfume.base)
load_data() (in module pyrfume.base)
load_mainland_data() (in module pyrfume.intensity)
load_manifest() (in module pyrfume.base)
load_raw_bmc_data() (in module pyrfume.keller)
load_threshold_compilation() (in module pyrfume.intensity)
LocalDataError
localize_remote_data() (in module pyrfume.base)
M
mackay() (in module pyrfume.physics)
main() (in module pyrfume.loaders.manoel_2016)
molar_evaporation_rate (pyrfume.odorants.Molecule attribute)
molar_evaporation_rate() (pyrfume.odorants.Solution method)
molar_evaporation_rates (pyrfume.odorants.Solution attribute)
molarities (pyrfume.odorants.Solution attribute)
molarity (pyrfume.odorants.Molecule attribute)
mole_fraction() (pyrfume.odorants.Solution method)
mole_fractions (pyrfume.odorants.Solution attribute)
molecular_weight (pyrfume.odorants.Molecule attribute)
Molecule (class in pyrfume.dbtables)
(class in pyrfume.odorants)
molecule (pyrfume.odorants.ChemicalOrder attribute)
molecules (pyrfume.odorants.Solution attribute)
mpl_embedding() (in module pyrfume.plotting)
mutate() (pyrfume.optimization.OdorantSetOptimizer method)
N
name (pyrfume.odorants.Molecule attribute)
(pyrfume.odorants.Vendor attribute)
O
Odorant (class in pyrfume.dbtables)
Odorant.Solutions (class in pyrfume.dbtables)
OdorantSetOptimizer (class in pyrfume.optimization)
P
parse_ghs_classification_for_odor() (in module pyrfume.pubchem)
parse_physical_description_for_odor() (in module pyrfume.pubchem)
parse_summary_for_odor() (in module pyrfume.pubchem)
part_id (pyrfume.odorants.ChemicalOrder attribute)
partial_pressure() (pyrfume.odorants.Solution method)
partial_pressures (pyrfume.odorants.Solution attribute)
plot_score_history() (pyrfume.optimization.OdorantSetOptimizer method)
plotly_embedding() (in module pyrfume.plotting)
Product (class in pyrfume.dbtables)
Publication (class in pyrfume.dbtables)
purity (pyrfume.odorants.ChemicalOrder attribute)
put() (pyrfume.dbtables.QuantityAdapter method)
pyrfume (module)
pyrfume.base (module)
pyrfume.cabinets (module)
pyrfume.datajoint_tools (module)
pyrfume.dbtables (module)
pyrfume.dream (module)
pyrfume.embedding (module)
pyrfume.intensity (module)
pyrfume.keller (module)
pyrfume.loaders (module)
pyrfume.loaders.manoel_2016 (module)
pyrfume.odorants (module)
pyrfume.optimization (module)
pyrfume.physics (module)
pyrfume.plotting (module)
pyrfume.pubchem (module)
pyrfume.sigma_ff (module)
pyrfume.westeros (module)
Q
QuantityAdapter (class in pyrfume.dbtables)
R
read_config() (in module pyrfume.base)
RemoteDataError
Report (class in pyrfume.dbtables)
reset_config() (in module pyrfume.base)
Route (class in pyrfume.dbtables)
run() (pyrfume.optimization.OdorantSetOptimizer method)
S
save_data() (in module pyrfume.base)
schematize() (in module pyrfume.datajoint_tools)
set_data_path() (in module pyrfume.base)
set_dj_definition() (in module pyrfume.datajoint_tools)
set_schema_name() (in module pyrfume.dbtables)
show_files() (in module pyrfume.base)
Site (class in pyrfume.dbtables)
smiles_to_image() (in module pyrfume.odorants)
smiles_to_mol() (in module pyrfume.odorants)
Solution (class in pyrfume.dbtables)
(class in pyrfume.odorants)
Solution.Compounds (class in pyrfume.dbtables)
Stimulus (class in pyrfume.dbtables)
Stimulus.Odorants (class in pyrfume.dbtables)
stock (pyrfume.odorants.Compound attribute)
Subject (class in pyrfume.dbtables)
Summary (class in pyrfume.dbtables)
Summary.Odorants (class in pyrfume.dbtables)
suppress_stdout() (in module pyrfume.optimization)
synonyms (pyrfume.odorants.Molecule attribute)
T
Technician (class in pyrfume.dbtables)
total_pressure (pyrfume.odorants.Solution attribute)
Trial (class in pyrfume.dbtables)
U
url (pyrfume.odorants.Vendor attribute)
url_to_json() (in module pyrfume.odorants)
V
vapor_concentration() (pyrfume.odorants.Solution method)
vapor_concentrations (pyrfume.odorants.Solution attribute)
vapor_pressure (pyrfume.odorants.Molecule attribute)
Vendor (class in pyrfume.dbtables)
(class in pyrfume.odorants)
vendor (pyrfume.odorants.ChemicalOrder attribute)
venturi() (in module pyrfume.physics)
Vessel (class in pyrfume.dbtables)
W
write_config() (in module pyrfume.base)
Pyrfume
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